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Advocacy Blog Educational Outreach Environmental Justice Global Change IGC Interfaces of Global Change IGEP Outreach Research Student Spotlight

IGC Fellows engage in science policy action through the Virginia-Science Community Interface coalition

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August 3, 2021

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As conservationist Rachel Carson once said, “The human race is challenged more than ever before to demonstrate our mastery, not over nature, but of ourselves.”  This sentiment is even more important today in a world that is facing a climate crisis. Through the interdisciplinary graduate education program of the Global Change Center (GCC), Interfaces of Global Change (IGC) Fellows are trained to uphold the GCC mission: to advance interdisciplinary scholarship and education to address critical global changes impacting the environment and society. The program empowers students with tools to be successful in collaborative research and to engage the wider community as part of the solution to global environmental challenges. One way in which Fellows have fulfilled this mission is through the creation and development of the Virginia-Science Community Interface coalition.

Started in 2019, The Virginia Scientist-Community Interface (V-SCI) is a coalition of scientists and engineers who are dedicated to getting science into the hands of community members. The inception of V-SCI was based on the fact that, while community-driven advocacy and activism can often be backed up by science, this expertise is not always available for local issues. Thus their mission is to provide scientific expertise for community-driven activism and advocacy in Virginia and the region as an independent and volunteer-led organization. The work often involves cross-checking industry and government documents with scientific literature across multiple disciplines.

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We work at the interface between scientists and nonprofit, grassroots, and community leaders to provide expertise for local and regional advocacy issues.

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A number of IGC Fellows have co-authored reports, led projects, and given presentations as part of the coalition, including Isaac VanDiest, Daniel Smith, Joshua Rady, Kerry Gendreau, Alaina Weinheimer, and Tyler Weiglein. Together, they aim to empower communities to advocate for themselves. Reflecting on his experience with V-SCI, Isaac says, My graduate program has taught me about global change in the classroom, and V-SCI has given me the opportunity to put skills to work in a real-world setting.” An added benefit to the coalition is that students from different universities across the Southeast are able to interact and address a diverse set of local and national issues. As Daniel says, V-SCI has allowed me to broaden my knowledge of science and policy, and to immediately apply that knowledge to solve a problem. The consistency of the group meetings has helped me gain confidence in work outside of my direct area of research.”

Fellows recently shared their work through a presentation titled, “V-SCI: Connecting Science with Local Environmental Advocacy,” at the 6th Annual IGC Research Symposium this past spring. Additionally, Isaac, Daniel, Joshua, and Kerry are working to designate V-SCI as an official IGC IGEP capstone project and encourage other Fellows to join.

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The coalition has created multiple reports addressing local environmental efforts in the community such as the Mountain Valley Pipeline, LLC’s (MVP) proposal, the Eviction Crisis for Seniors in Virginia during the COVID-19 pandemic, and the Impact of the Atlantic Coast Pipeline on at-risk-species. Current projects that are actively recruiting volunteers include addressing industrial pollution in southwest Virginia, exploratory healthcare advocacy work, and protecting the candy darter. 

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Advancing their mission will require continued efforts from objective scientists who are interested in community advocacy. With over 100 graduate student members from 7 institutions in their growing network, V-SCI provides ample networking, leadership, and research opportunities. Currently, V-SCI is looking to recruit more members for ongoing projects this summer. The coalition welcomes individuals at all levels and from all backgrounds, both personally and professionally. No disciplinary knowledge related to the projects is expected and they are happy to provide mentorship.

The coalition also continually seeks feedback and reviews from senior scientists who support their mission. If you are interested in learning more about their work and how to get involved, V-SCI leaders hold open office hours every Friday at 1pm EST (zoom link here).

For more information, view the V-SCI Student Group Flyer, or contact info@viginiasci.org.  

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Announcements Global Change IGC Interfaces of Global Change IGEP

Meet the new Interfaces of Global Change Curriculum Committee

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July 26, 2021

Meet the newest members of the Interfaces of Global Change Curriculum Committee (IG3C), GCC faculty members Jennifer Russell and Holly Kindsvater, and IGC Fellows Amanda Hensley and Tyler Weiglein.

Several Global Change Center faculty members and IGC Fellows have recently completed terms on the committee. We extend sincere gratitude to Bruce Hull, Jeff Walters, Sarah Kuchinsky, and Melissa Burt for their service. We would also like to highlight the leadership of Bruce and Jeff, who have provided immense energy and guidance over the past several years to evolve and strengthen the IGC curriculum. The entire IG3C team has navigated a tumultuous 18 months in our academic journey and guided the IGC community and seminar endeavors admirably. Thank you, all!

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Current IG3C Members

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Julia Gohlke
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Erin Hotchkiss
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Cully Hession
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Michelle Stocker

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Jennifer Russell
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Holly Kindsvater
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Amanda Hensley
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Tyler Weiglein
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A special thank you to these outgoing IG3C members!

We deeply appreciate your time, energy, and balanced guidance in this leadership role. 

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Bruce Hull

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Jeff Walters

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Sarah Kuchinsky

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Melissa Burt

[/vc_column_text][/vc_column_inner][/vc_row_inner][/vc_column][/vc_row][vc_row][vc_column][vc_separator color=”black” style=”shadow”][vc_column_text]The Interfaces of Global Change Curriculum Committee (IG3C) is the primary entity responsible for visioning, oversight, and implementation of the IGC IGEP curriculum.  Primary duties entail visioning, planning, and delivering of the annual fall and spring seminar courses.  These duties include ensuring continuity of existing high-quality graduate programming, as well as ideation and visioning to meet the evolving programmatic needs of the growing, diverse IGC IGEP student population.[/vc_column_text][/vc_column][/vc_row]

Categories
Accolades Announcements Drinking water Global Change Research Undergraduate Experiential Learning Water

GCC Undergraduate Research Grant recipient Dexter Howard leads first-author publication from the Carey Lab

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March 1, 2021

[/vc_column_text][/vc_column][/vc_row][vc_row][vc_column width=”2/3″][vc_column_text]Dexter Howard, a former undergraduate researcher (B.S. ’20 in Water: Resources, Policy, and Management) and now PhD student with GCC affiliate Dr. Cayelan Carey, has first-authored a publication of his undergraduate thesis research. The paper, “Variability in fluorescent dissolved organic matter concentrations across diel to seasonal time scales is driven by water temperature and meteorology in a eutrophic reservoir”, published in the journal Aquatic Science February 2021. Read the article here.

Beginning in 2018, Dexter collected weekly samples of organic carbon (OC) in a Roanoke drinking water reservoir, thought to be the drivers of disinfection byproducts (DBPs) in the water column. In 2019, data collection expanded to the sub-hourly level more relevant to the decision-making timescale used by reservoir managers. The team’s analysis and findings of the magnitude and drivers of OC variability in the reservoir are now published in the journal Aquatic Sciences. Dexter’s undergraduate research experience included mentorship by IGC fellow Mary Lofton, GCC faculty in the Reservoir Science Group at VT, and with support from the GCC Undergraduate Research Grant program and the Virginia Water Resource Research Center at VT.

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Global Change New Publications Research Water

Low oxygen levels in lakes and reservoirs may accelerate global change

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VT News | December 9, 2020

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Header image: Beaverdam Reservoir in Vinton, Virginia. Photo courtesy of Alexandria Hounshell.
 

Because of land use and climate change, lakes and reservoirs globally are seeing large decreases in oxygen concentrations in their bottom waters. It is well-documented that low oxygen levels have detrimental effects on fish and water quality, but little is known about how these conditions will affect the concentration of carbon dioxide and methane in freshwaters.

Carbon dioxide and methane are the primary forms of carbon that can be found in the Earth’s atmosphere. Both of these gases are partially responsible for the greenhouse effect, a process that increases global air temperatures. Methane is 34 times more potent of a greenhouse gas than carbon dioxide, so knowing how low oxygen levels within lakes and reservoirs affect both carbon dioxide and methane could have important implications for global warming.

Until now, researchers did not have any empirical data from the whole-ecosystem scale to definitively say how changing oxygen can affect these two greenhouse gases.

“We found that low oxygen levels increased methane concentrations by 15 to 800 times at the whole-ecosystem scale,” said Alexandria Hounshell, a postdoctoral researcher in the Department of Biological Sciences in the College of Science. “Our work shows that low oxygen levels in the bottom waters of lakes and reservoirs will likely increase the global warming potential of these ecosystems by about an order of magnitude.”

Virginia Tech researchers just published these findings in a high-impact paper in Limnology and Oceanography Letters.

To determine a correlation between oxygen and methane concentrations, researchers honed in on two reservoirs outside of Roanoke. In collaboration with the Western Virginia Water Authority, the research team operated an oxygenation system in Falling Creek Reservoir, which pumps oxygen into the bottom waters and allows researchers to study oxygen concentrations on a whole-ecosystem scale. By also monitoring Beaverdam Reservoir, an upstream reservoir without an oxygenation system, they were able to compare greenhouse gas concentrations in the bottom waters of both reservoirs. They ran the experiment over three years to see how consistent their findings were over time.

“Methane levels were much higher when there was no oxygen in the bottom waters of these reservoirs; whereas the carbon dioxide levels were the same, regardless of oxygen levels,” said Cayelan Carey, associate professor of biological sciences and affiliated faculty member of the Global Change Center. “With low oxygen levels, our work shows that you’ll get higher production of methane, which leads to more global warming in the future.”

This study was one of the first to experimentally test at the whole ecosystem-scale how different oxygen levels affect greenhouse gases. Logistically, it is extremely challenging to manipulate entire ecosystems due to their complexity and many moving parts. Even though scientists can use computer modelling and lab experiments, nothing is as definitive as the real thing.

“We were able to do a substitution of space for time because we have these two reservoirs that we can manipulate and contrast with one another to see what the future may look like, as lower bottom water oxygen levels become more common. We can say with high certainty that we are going to see these lakes become bigger methane emitters as oxygen levels decrease,” said Carey.

According to Hounshell, the strength of their results lie in the study’s expanse over multiple years. Despite having a range of meteorological conditions over the three years, the study affirmed that much higher methane concentrations in low oxygen conditions happen consistently every year, no matter the air temperature.

Ultimately, this study is crucial for how researchers, and the general public, think about how freshwater ecosystems produce greenhouse gases in the future. With low oxygen concentrations increasing in lakes and reservoirs across the world, these ecosystems will produce higher concentrations of methane in the future, leading to more global warming.

Of course, these ecological changes are not just happening in the Roanoke region. Around the globe, a number of studies have pointed to changing carbon cycling in terrestrial and marine ecosystems. However, this study is one of the few to address this phenomenon in lakes and reservoirs, which are often neglected in carbon budgets. This study will fill in these knowledge gaps and shine a spotlight on what we can do as citizens to solve this problem.

This study suggests that keeping lakes from experiencing low oxygen concentrations in the first place could further prevent them from hitting the tipping point, when they start to become large methane producers. Small decisions can add up. For example, decreasing runoff into lakes and reservoirs can prevent the depletion of oxygen in their bottom waters. “Don’t put a ton of fertilizer on your lawn, and be really strategic about how much fertilizer you use and how you use it,” said Hounshell.

And greenhouse gases are just a small part of the bigger picture of how reservoirs function in the global carbon cycle. Currently, the research team is conducting follow-up oxygen manipulation studies to elucidate other components that contribute to ecosystem change. They will continue to monitor oxygen manipulations in the two Roanoke reservoirs to see how the reservoir can affect the ecosystem for the long haul.

This project was funded by the Virginia Tech Institute for Critical Technology and Applied Science, the Fralin Life Sciences Institute at Virginia Tech, and by National Science Foundation grant DEB-1753639.  

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CONTACT:

Kristin Rose Jutras

(540) 231-6614

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Categories
Announcements Global Change Interfaces of Global Change IGEP

New Diversity and Rural Environmental Health fellowship opportunities for PhD students

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November 23, 2020

 

With support from the Fralin Life Sciences Institute and the Virginia Tech Graduate School, the Global Change Center (GCC) is pleased to announce two new graduate fellowship opportunities intended to help diversify and strengthen our IGC IGEP community.

Our new Global Change Diversity Fellowships are designated for recruiting new Ph.D. students from underrepresented communities to Virginia Tech. The Rural Environmental Health Fellowships are intended to help expand existing strengths in studying environmental health issues in rural communities.  Both of these fellowship opportunities will enable us to attract new talent to our IGEP and further diversify the perspectives within our group.

Together with the existing Global Change fellowships awarded to current IGC IGEP students, the Global Change Center will offer a total of eight graduate fellowship opportunities for the 2021-22 academic year.  All fellowships include 12 months of graduate stipend and in-state tuition (~$40,000 total value).  Please visit the Graduate Fellowship Opportunities page for eligibility, application and deadline information.

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Diversity Fellowship Program

New in 2021, the Global Change Center will award two graduate assistantships to new Ph.D. students from underrepresented groups focusing on the social and/or environmental challenges associated with rapid global changes such as pollution, invasive species, climate change, and habitat loss. [/vc_column_text][/vc_column_inner][vc_column_inner width=”1/3″][vc_single_image image=”52847″ img_size=”150×150″ alignment=”center” style=”vc_box_border_circle_2″][/vc_column_inner][/vc_row_inner][/vc_column][/vc_row][vc_row][vc_column][vc_row_inner][vc_column_inner width=”2/3″][vc_column_text]

Rural Environmental Health Fellowship Program

New in 2020, the Global Change Center will award two graduate assistantships to Ph.D. students who will engage in interdisciplinary activities that advance research at the nexus of environmental and health sciences in rural settings.[/vc_column_text][/vc_column_inner][vc_column_inner width=”1/3″][vc_single_image image=”53169″ img_size=”150×150″ alignment=”center” style=”vc_box_border_circle_2″][/vc_column_inner][/vc_row_inner][vc_row_inner][vc_column_inner width=”2/3″][vc_column_text]

Global Change Fellowship Program

The Interfaces of Global Change (IGC) Interdisciplinary Graduate Education Program (IGEP) awards four Ph.D. assistantships every academic year intended to support students who have demonstrated commitment to and engagement within the IGC program, and who will benefit from the funding in a way that will enhance the interdisciplinary and global-change aspects of their research.[/vc_column_text][/vc_column_inner][vc_column_inner width=”1/3″][vc_single_image image=”50373″ img_size=”150×150″ alignment=”center” style=”vc_box_border_circle_2″][/vc_column_inner][/vc_row_inner][/vc_column][/vc_row][vc_row][vc_column][vc_separator style=”shadow”][/vc_column][/vc_row]

Categories
Announcements Biodiversity Faculty Spotlight Global Change Research

Walking a fine line: How chemical diversity in plants facilitates plant-animal interactions

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VT News | September 9, 2020

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We aren’t the only beings who enjoy feasting on tasty fruits like apples, berries, peaches, and oranges. Species like bats, monkeys, bears, birds, and even fish consume fruits — and plants count on them to do so.

Wildlife disperse their seeds by eating the fruit and defecating the seed elsewhere, thus carrying the fruit farther away and spreading the next generation of that plant. But attracting wildlife might also mean attracting harmful organisms, like some species of fungi.

Plants walk a fine line between attraction and repulsion, and to do this, they evolved to become complex chemical factories. Chemical ecologists at the Whitehead Lab at Virginia Tech are working to uncover why plants have such diverse chemicals and to determine the functions of these chemicals in plant-microbe and plant-animal interactions.

“There is still so much we don’t know about the chemical compounds plants use to mediate these complicated interactions. As we continue to lose global biodiversity, we are also losing chemical diversity and the chance for discovery,” said Lauren Maynard, a Ph.D. candidate in the Department of Biological Sciences within the College of Science.

Piper sancti-felicis is a neotropical shrub related to Piper nigrum, which produces black peppercorn. Although P. sancti-felicis isn’t as economically important as its peppery cousin, it fulfills an important ecological role as one of the first plants to colonize a recently disturbed area. It also serves as an important food source for wildlife, especially bats and birds.

The research team on a Piper expedition in Barva Volcano National Park in Costa Rica. From left to right: Susan Whitehead, Lauren Maynard, Juan Pineda (Organization for Tropical Studies), Orlando Vargas Ramírez (Organization for Tropical Studies), Gerald Schneider (Virginia Tech), and Juan Chaves (Barva Volcano National Park).Photo courtesy of Lauren Maynard.
The research team on a Piper expedition in Barva Volcano National Park in Costa Rica. From left to right: Susan Whitehead, Lauren Maynard, Juan Pineda (Organization for Tropical Studies), Orlando Vargas Ramírez (Organization for Tropical Studies), Gerald Schneider (Virginia Tech), and Juan Chaves (Barva Volcano National Park). Photo courtesy of Lauren Maynard.

 

At La Selva Biological Station in Costa Rica, Maynard and a team of international ecologists worked to better understand the evolutionary ecology of P. sancti-felicis. Their findings were recently published in Ecology and serve as a step forward in understanding why plants have such great chemical diversity.

By analyzing the samples, the team discovered 10 previously undocumented alkenylphenol compounds in P. sancti-felicis. Alkenylphenols are rare in the plant kingdom, as they have been reported only in four plant families.

The alkenylphenol compounds were not distributed evenly across the plant, though. Maynard found that fruit pulp had the highest concentrations and diversity of alkenylphenol compounds, while leaves and seeds had only a few compounds at detectable levels. Later, a pattern emerged: Levels of alkenylphenol were highest as flowers developed into unripe pulp, but then decreased as the pulp ripened.

When Maynard and her collaborators tested alkenylphenols with different species of fruit fungi, they found that the alkenylphenols had antifungal properties. But those same compounds also made the fruits less tasty to bats, which are the plant’s main seed dispersers.

This is a delicate balance: high levels of alkenylphenols protected the fruit from harmful fungi as it developed, but when it ripened, alkenylphenol levels dwindled so that bats would be interested in eating it.

“Many fungal pathogens attack ripe fruits and can make fruits unattractive to dispersers, or worse, completely destroy the seeds. Our study suggests that these toxins represent a trade-off in fruits: They do deter some potential beneficial partners, but the benefits they provide in terms of protecting seeds outweigh those costs,” said Susan Whitehead, an assistant professor in the Department of Biological Sciences.

This study is the first to document an ecological role of alkenylphenols. Chemical interactions in the plant kingdom are not easy to see, but they play a crucial role in balancing trade-offs in various interactions. In the case of P. sancti-felicis, alkenylphenols help the plant walk the fine line between appealing to seed dispersers and repelling harmful fungi.

“Finding the nonlinear pattern of alkenylphenol investment across fruit development was really exciting. It suggests that the main function of the compounds is defense,” said Maynard, who is also an Interfaces of Global Change Fellow in the Global Change Center, housed in the Fralin Life Sciences Institute.

This discovery helps researchers understand the nuances of tropical forest ecology and how chemical diversity in plants helps maintain that delicate balance. Plant chemical defenses have mostly been studied in leaves of plants, so this new discovery furthers scientists’ understanding of how and why these compounds are crucial in fruits. And because fruits are the vehicle for seed dispersal, these chemicals play a significant ecological role.

“This study advanced our understanding of how tropical forests work by bringing together scientists and expertise from multiple fields of study: plant ecology, animal behavior, chemistry, and microbiology,” said Whitehead, who is also an affiliated faculty member of the Global Change Center and the Fralin Life Sciences Institute.

The Whitehead Lab has several ongoing projects focused on plant chemistry and seed dispersal at La Selva Biological Station. Since international travel is not possible at the moment, the team hopes to resume their research when it is safe to do so. 

 – Written by Rasha Aridi

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CONTACT:

Kristin Rose Jutras
(540) 231-6614

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Categories
Announcements Evolution Faculty Spotlight Global Change Research

A trans-Atlantic journey: how microbes and dust travel from Africa to the Americas

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VT News | September 1, 2020

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Each year, over 180 million tons of dust are swept up from the Sahara Desert, blown across the western edge of Africa, wisped across the Atlantic Ocean, and deposited throughout the Americas. These are called dust plumes, and they carry more than just sand.

In fact, dust plumes play a crucial role in the long-range transport of microorganisms. A team led by Virginia Tech researchers in collaboration with the U.S. Geological Survey and the University of La Laguna in the Canary Islands received a $1.1 million grant from NASA to study microbial diversity in dust plumes and the physics behind the transport of dust and microbes along superhighways in the sky.

“One of the less understood aspects of dust is that these particles could be a vehicle for microbes — viruses, bacteria, fungi that can come across the Atlantic, as if hitchhiking on these dust particles,” said Hosein Foroutan, the principal investigator on the grant and assistant professor in the Department of Civil and Environmental Engineering in the College of Engineering.

Foroutan and his collaborators will take a transdisciplinary approach to study the microbial biodiversity in dust plumes by analyzing collected samples, investigating satellite data, and creating transport models. Ultimately, this research will inform experts about which microbes are being transported to the Americas and what that could mean for the health of plants, domestic animals, and people.

 

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To do this, the team is operating on an intercontinental scale. They will analyze dust samples collected from various sites between the United States and Africa, including the middle of the Atlantic. Sampling at various locations on the “dust superhighway” will allow the team to study differences in microbial biodiversity. Using DNA sequencing, culturing, and other microbiological techniques, the team will be able to determine the types, concentrations, and viability of microbes in the dust samples.

“Little is known about the diversity and viability of microbes traveling on African dust. Could devastating plant and animal pathogens be riding on African dust? If so, we would like to know where they are going and when they might arrive there,” said David Schmale, professor in the School of Plant and Environmental Sciences in the College of Agriculture and Life Sciences. As a collaborator, Schmale will work to identify microorganisms in dust samples.

But microorganisms are especially sensitive to the environment — temperature, altitude, precipitation, humidity, and ultraviolet radiation can all affect the survival of microbes. Coupled with atmospheric and satellite data, the researchers will be able to use microbial diversity data to peer into the life of microorganisms traveling in dust plumes from one continent to another.

“We’re lucky we can associate microbes with dust, which we can detect using satellites because we have no way of continuously detecting these airborne microorganisms on this scale. You’re talking about a huge scale — a couple thousand kilometers apart — and up to five to six kilometers above the surface,” said Foroutan, who is also an affiliated faculty member of the Fralin Life Sciences Institute and the Global Change Center at Virginia Tech.

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esearch on the microbial diversity in dust plumes can help scientists understand what kind of microbes may be blown in from overseas and how to prepare for that. Since species in the Americas have not evolved to deal with microbes native to other parts of the world, an invasive microorganism can pose a significant threat to plants, animals, or people.

“Pathogens are not respecters of international boundaries. One of my main motivations is to help farmers and others manage the risk that dust-borne microorganisms may pose. With better tracking and prediction tools, stakeholders can make informed choices about precautions they can take to halt the spread of disease and ensure a secure food supply for all of us,” said Shane Ross, a collaborator on this grant and a professor in the Department of Aerospace and Ocean Engineering. Ross studies transport using observational and simulation data and will be applying his expertise to analyze dust transport.

Due to the scale and complexity of this study, Foroutan said “no one can tackle this problem by themselves” and that interdisciplinary collaboration is key. Other investigators include Dale Griffin from the U.S. Geological Survey and Cristina González Martín from the University of La Laguna in the Canary Islands, who helped collect dust samples to analyze for this project.

As the project progresses in the future, the team hopes to put out an open call for international collaborators to contribute their samples for a more global analysis of this phenomenon.

– Written by Rasha Aridi

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CONTACT:

Steven Mackay
540-231-5035

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Categories
Announcements Evolution Faculty Spotlight Global Change Research

Biological Science’s Josef Uyeda using NSF CAREER Award to capture big picture connection of macro- and micro-evolution

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VT News | August 27 2020

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Scientists know a lot about evolution. And like, evolution, this knowledge is always changing, growing, becoming stronger. But for all the work done during a span of two centuries and change, scientists mostly have pictures of evolution’s history, unsorted and scattered.

Snapshot photographs if you will, strewn across a table. Josef Uyeda, an assistant professor and evolutionary biologist in the Virginia Tech Department of Biological Sciences, seeks to take all those “photographs” and make them into a photomosaic – you’ve seen them, often in movie posters or jigsaw puzzles – where hundreds of photographs are assembled to form a larger image of its own. (Say, a man’s face, or the New York City skyline.) More simply, Uyeda is taking on a massive connect-the-dots project that spans millions of years of evolution, in its smallest and largest forms, with an eye toward the future.

“Studies of ‘evolution-in-action’ have revealed much about what causes evolutionary change, including why it sometimes fails. However, it is not always obvious when these causes are also responsible for extinction and adaptation over million-year timescales — the timescale primarily relevant to the evolution and maintenance of biodiversity,” said Uyeda, a faculty member in the Virginia Tech College of Science and an affiliated member of the Virginia Tech Global Change Center.

Uyeda will use a $778,000 five-year National Science Foundation (NSF) Faculty Early Career Development (CAREER) Program grant to carry out his study. The CAREER award is the NSF’s most prestigious awards in support of early-career faculty who have the potential to serve as academic role models in research and education.

“The goal of the grant is really to take how we study evolution across the tree of life from simply looking for patterns of how traits are related, to understanding what causes them to evolve,” Uyeda added. “How traits might evolve in response to the environment, how traits might respond to each other and trying to connect those to what we do at the microevolutionary scale, where we understand how variable traits are, the genetics underlying them, how natural selection works, and the driving processes of evolution. The goal is to bridge these together, making models smarter and allowing them to take data from both scales, rather than simply making more complicated models. If we unite those two sides together, we can get better answers to what’s happening.”

To take it a step further, Uyeda wants to predict future evolution much like meteorologist predict weather patterns hurricanes, and winter storms. This ties to climate change, and the survival of scores of fauna and flora. In weather, micro-actions in the atmosphere can lead to major- and macro-events, the butterfly effect. We know when the sunlight hits the Earth, certain parts are warmed, and where the sun does not reach as much, it is cold. It’s the predictability that Uyeda wants to bring to the study of evolution.

“With increasing rates of global change, it is vital to understand how and why species either adapt and survive, or fail to adapt and perish,” Uyeda said. “This project will build a bridge between the causes of evolution studied over short timescales and the long-term outcomes evident from existing evolutionary diversity with a new set of computational tools and resources for biology research and education. New models will integrate field, genetic, and experimental studies with patterns of trait change from across the tree of life.”

The bulk of the study will use statistics and data modeling. “It’s all based of what’s called the comparative method,” Uyeda added. “We can’t do experiments at million-year time scales, but we can look across species and see if all the species that live in a warm environment are evolving faster, or maybe all the warm-blooded organisms are evolving faster than the cold-blooded organisms. But how do we know those traits are actually related to one another? Well, we have to try and understand the entire evolutionary history through time to make sense of the patterns we see, and we have to use models to fill in the evolutionary history that we don’t see.”

This, of course, is difficult. The data sets of evolution from across the globe, the “tree of life” as Uyeda says, the fossil record, and in modern day studies of “evolution in action” are often disconnected. So, Uyeda and his team – which includes graduate students, a post-doc, and partner universities, will hit at the project in pieces.

“We’re going to take a page out of how we study DNA evolution, which borrows heavily from things like the theory of population genetics, and the understanding of how mutation and DNA actually evolves, to construct the tree of life.” To do the same for traits, they will look at what’s known from the evolution of biomechanics, the underlying genetics of mammal tooth evolution, and the millennia of fossil records and integrate these together to connect patterns from short to long timescales.

“I have not collected most of the data myself, and it would be impossible for me to do so alone. But I am trying to pull together existing datasets and bring them together in a single analysis. If we do so, then we can start to connect the big picture patterns of evolution to the short time scales we often use to study it, where we understand cause and effect,” Uyeda said.

“We want to look to the past to inform what we do in the future, as these are changes play out over millions of years. If we don’t understand how those processes work, then how can we understand what the future impacts will be of what we are doing today?”

 

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Categories
Announcements Disease Global Change Research

Researchers co-located to Steger Hall at the FLSI to tackle infectious diseases and rapid environmental change

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VT News | August 27 2020

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The COVID-19 pandemic has shined a spotlight on the importance of bringing together innovative scientific minds to tackle infectious diseases and the need to forecast future threats at the human-environment interface.

The Fralin Life Sciences Institute is co-locating researchers from across three colleges at Virginia Tech to Steger Hall to make an impact at the interface of infectious disease and the environment.

“We are building upon the launch of our newly formed Center for Emerging, Zoonotic, and Arthropod-borne Pathogens and Fralin’s existing centers to support synergies among faculty who are working to tackle some of the grand life-science challenges of our time and improve the human condition. We are excited to have an impact on the community and to develop new leaders at the intersection of environmental changes and infectious disease, while building on our strengths in computational modeling and data analysis,” said Matt Hulver, executive director of the Fralin Life Sciences Institute.

A group of Virginia Tech professors who focus on vector-borne disease, disease ecology, pathogen transmission, ecological forecasting, and data analysis and computational modeling have just moved their research programs to Steger Hall and are looking forward to collaborating:

Clément Vinauger, assistant professor, biochemistry, College of Agriculture and Life Sciences. The Vinauger lab aims to understand the mechanisms that allow blood-feeding insects to be efficient disease vectors and identify and characterize factors that modulate their host-seeking behavior with the goal of developing new modes of mosquito control. The Vinauger lab leverages interdisciplinary tools to study the genetic and neural basis of mosquito behavior by combining methods from biochemistry, neuroscience, engineering, and chemical ecology.

Chloé Lahondère, assistant professor, biochemistry, College of Agriculture and Life Sciences. The Lahondère lab studies the effects of temperature and climate change on the eco-physiology and behavior of mosquitoes, kissing bugs, and tsetse flies. Her lab also has an interest in sugar feeding behavior in mosquitoes as well as in monitoring pathogens in local mosquito populations. The main goal is to better understand the ecology and biology of disease vector arthropods to develop new control tools using a multidisciplinary approach involving genetics, behavioral analyses, and field observations. These tools can be exploited to control mosquito populations and reduce the spread of disease.

Kate Langwig, assistant professor, biological sciences, College of Science. Langwig is a quantitative field ecologist, and uses mathematical models parameterized by field and experimental data to provide insights at the host-pathogen-environment interface. Langwig’s research program focuses on the role of disease in determining population dynamics and community structure. As part of this research, she explores how variation among hosts influences epidemiological dynamics, population impacts, and the effectiveness of vaccines. Langwig’s lab also studies the impact of infectious disease on ecological communities, the importance of disease in determining species extinctions, and the long-term persistence of populations affected by invasive pathogens.

Joseph Hoyt, assistant professor, biological sciences, College of Science. Hoyt’s research interests lie at the intersection of disease ecology and conservation biology. His lab works on basic and applied research questions, primarily in emerging infectious diseases of wildlife. His current research program is focused on understanding how pathogens are transmitted through multi-host communities, spanning individual to landscape scales. He is particularly interested in disentangling the relative importance of environmental transmission and free-living pathogen stages to help facilitate the control of future disease outbreaks and provide a deeper ecological understanding of infectious diseases.

Brandon Jutras, assistant professor, biochemistry, College of Agriculture and Life Sciences. Lyme disease is now the most reported vector-borne disease in the United States. In Virginia, it is estimated that the incidence has increased more than 6,000 percent in the past 10 years. Four major species of ticks can transmit the bacteria that causes Lyme disease, but only one of them, the blacklegged, or deer tick (Ixodes scapularis), is found in Virginia. The Jutras lab is using cutting-edge quantitative microscopy and molecular techniques to discover new targets for the diagnosis and treatment of Lyme disease. In addition, the Jutras lab is studying closely-related bacteria that cause syphilis, tickborne relapsing fever, and leptospirosis.

Dana Hawley, professor, biological sciences, College of Science. Pathogens are colonizing novel host populations with increasing frequency, underscoring the need to understand what factors drive infectious disease spread and the evolution of more harmful pathogens. The Hawley lab investigates the ecological and evolutionary mechanisms that underlie host susceptibility, pathogen virulence (i.e., the amount of harm that pathogens cause their hosts), and infectious disease transmission. The Hawley lab approaches disease ecology from a multi-disciplinary perspective to understand how individual physiology and pathogen characteristics, such as virulence, social behavior, and environmental context, interact to influence infectious disease dynamics. Ultimately, these studies will improve the understanding of the broader processes that underlie pathogen evolution and spread in wild animal, domestic animal, and human populations.

“Infectious diseases don’t follow disciplinary boundaries – their spread results from the convergence of molecular interactions within cells and tissues and ecological interactions between organisms and with their environment. We really have to break out of our departmental silos to effectively study the complexity of infectious disease emergence and spread,” said Hawley.

The Global Change Center, an arm of the Fralin Life Sciences Institute, is also moving and will be administratively housed in Steger Hall.

“Big problems require innovative collaborations and bold strategies to find solutions. Co-locating faculty from different colleges working on some of the most ‘wicked’ societal challenges of our time, will generate new collaborations, foster interdisciplinary student training, and promote efficiency. I am excited to make the move and help support the vibrant community in Steger Hall,” said William Hopkins, associate executive director of the Fralin Life Sciences Institute and director of the Global Change Center.

Hopkins’ research program at Virginia Tech, which focuses on physiological ecology, conservation, and wildlife ecotoxicology, will also be moving to Steger Hall.

“The Fralin Life Sciences Institute is removing barriers, both physical and disciplinary, and is positioning our faculty to advance Virginia Tech’s work in infectious diseases and its impact on a global community,” said Cyril Clarke, executive vice president and provost of Virginia Tech. “Working together across a range of disciplinary interests, I anticipate that new ways of thinking about the linkages between human, animal, and environmental health will better prepare us to manage pandemics such as COVID-19.”

A group of scientists with cutting-edge skills in data analysis, computer modeling, and ecological forecasting are also joining Steger Hall to tackle multiple problem spaces including those related to global change:

Leah Johnson, associate professor, statistics, College of Science. Johnson is a statistical ecologist working at the intersection of statistics, mathematics, and biology. She focuses on understanding how differences between individuals in a population result from external heterogeneity and stochasticity, and how this variability influences population level patterns, especially in the space of infectious disease epidemiology. She leads the Quantitative Ecological Dynamics Lab (QED Lab). The lab currently focuses on understanding how climate impacts transmission of vector-borne diseases, and how to predict changes in where disease is likely to be transmitted as climate changes. She also examines how environment and human changes to the landscape can impact energetics, foraging behavior, and population dynamics of animals. Her approach is to use theoretical models to understand how systems behave generally, while simultaneously seeking to confront and validate models with data and make predictions. Thus, a significant portion of her research focuses on methods for statistical — particularly Bayesian — inference and validation for mechanistic mathematical models of biological and ecological systems.

Lauren Childs, assistant professor, mathematics, College of Science. Childs develops and analyzes mathematical and computational models to examine biologically motivated questions. A main focus of her research program is understanding the pathogenesis and spread of infectious diseases, such as malaria and dengue. There is an emphasis on the interactions within an organism, such as between an invading pathogen and the host immune response. In addition, she also examines how these within-host interactions impact transmission of disease throughout a population. Construction and analysis of the models utilizes mathematics ranging from differential equations, dynamical systems, to stochastic analysis.

Luis Escobar, assistant professor, fish and wildlife conservation, College of Natural Resources and Environment. Ongoing global change projects in the Escobar lab include the role of aquatic and terrestrial invasive species in disease transmission, effects of climate change on the burden of vector-borne and water-borne diseases, and the development of analytical methods to assess the impacts of global change on biodiversity and diseases. Escobar’s lab focuses on the distribution of biodiversity, including parasites and pathogens at global scales, and under past, current, and future environmental conditions. Escobar is particularly interested in the use of ecoinformatics to study infectious diseases of fish and wildlife origin.

Quinn Thomas, associate professor, forest resources and environmental conservation, College of Natural Resources and Environment. Thomas’ research group studies the forest and freshwater ecosystems upon which society depends. They use quantitative models to simulate how ecosystems change over time in response to land-use, climate change, atmospheric deposition, and management. Additionally, they measure carbon, water, and energy exchange between ecosystems and the atmosphere using eddy-covariance and biometeorology sensors.  Finally, they forecast the future of ecosystems by combining observations and ecosystem models using Bayesian statistical techniques. Thomas leads an NSF-funded effort to galvanize the field of ecological forecasting using data from the National Ecological Observatory Network, an effort that includes Leah Johnson on the leadership team.

Johnson, Childs, Escobar, and Thomas will focus on mathematic and computational modeling across multiple problem spaces related to infectious disease, climate change, invasive species, and other aspects of rapid environmental change.

“I’m excited at this point in my career to expand the group of people I work with across campus while still representing my home department in the College of Natural Resources and Environment. A career is a set of chapters, and this chapter’s move to Steger Hall will enable me to create new collaborations with quantitative and computational scientists from different departments who are interested in solving problems at the environment-human interface,” Thomas said.

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Categories
Accolades Blog Drinking water Global Change News Newsletter Student Spotlight Undergraduate Experiential Learning

My Virtual Summer Internship with the EPA, by GCC Science Policy Fellow Kerry Desmond

[vc_row][vc_column][vc_column_text]While Kerry’s participation in the Washington Semester Program with the School of Public and International Affairs was cancelled due to COVID-19, her summer internship with the US Environmental Protection Agency continued remotely. Kudos to Kerry for successfully completing her summer internship and for her resiliency and adjustment to the remote and virtual experience. We wish her the best in her senior year![/vc_column_text][vc_separator][vc_column_text]

August 27, 2020

by Kerry Desmond, winner of the Global Change Center’s 2020 Science Policy Fellowship 

After completing the end of my junior year virtually, I was both eager and hesitant to begin a virtual internship with the Environmental Protection Agency. Although I am a civil engineering student with a focus in environmental and water resources engineering, I have always been interested in environmental and public health policy and was so excited to get involved in work that combined both fields. My specific placement within the EPA was in the Water Enforcement Division (WED) of the Office of Civil Enforcement (OCE). The priority of WED is to enforce the Clean Water Act and Safe Drinking Water Act, and the division is divided into two branches: Industrial and Municipal. Through the projects I worked on, I had the opportunity to work with engineers, scientists, and attorneys from both branches (along with EPA personnel in other HQ offices, regional EPA personnel, and consultants). Despite my initial hesitation, my experience working remotely proved to be just as exciting and stimulating as I had hoped it would be.

[/vc_column_text][/vc_column][/vc_row][vc_row][vc_column width=”1/2″][vc_single_image image=”51198″ img_size=”full” add_caption=”yes” alignment=”center” style=”vc_box_border”][/vc_column][vc_column width=”1/2″][vc_column_text]The main project I worked on during the summer was helping improve the functionality of an Address Comparison Tool (ACT) for facilities with stormwater permits. Essentially, ACT takes a known permittee list from EPA’s Enforcement and Compliance History Online (ECHO) database and compares it to a list of facilities that should theoretically have a stormwater permit (typically provided by a state or an outside database). The goal is to find disparities among the two lists and discover facilities that don’t have permits so that they can be targeted and become candidates for federal enforcement. Since ACT compares two facilities at a time and determines a score for them, I was tasked with conducting analysis to determine a numerical threshold for the scoring system. This threshold would be used to differentiate duplicate addresses from unique addresses. This required a lot of deliberation with my mentor and an outside consultant, as well as a lot of analysis within ACT and Excel, but I thoroughly enjoyed the challenge of trying to figure out the complexities of ACT and its scoring system.[/vc_column_text][/vc_column][/vc_row][vc_row][vc_column][vc_column_text]Along with this project, I had the opportunity to conduct a research project with another intern for a National Compliance Initiative (NCI) under the Safe Drinking Water Act. Specifically, we were tasked with coming up with a recommendation as to whether there is a need for public water system-specific inspector training for risk communication and community involvement. This project was especially interesting because we had the chance to interview EPA personnel from all across the Agency and hear about current and past projects that necessitated this type of communication and involvement. I also had the chance to work on another NCI, which focused on National Pollutant Discharge Elimination System (NPDES) Significant Noncompliance (SNC) facility targeting. SNC encompasses the highest priority NPDES permit violations such as significantly exceeding pollutant effluent limits, or not submitting a discharge monitoring report for multiple quarters. The goals of the targeting plan were to determine the highest priority corporations with multiple facilities in various states and the highest priority individual facilities in any state. I conducted the analysis by looking at criteria within ECHO to evaluate these target facilities and characterize the type of violations and scope of enforcement actions already taken.[/vc_column_text][/vc_column][/vc_row][vc_row][vc_column][vc_column_text]

I had a bit of time to get adjusted to a remote environment, but I knew it would be different to work in a virtual office setting rather than a virtual class setting. I was especially weary because, as an intern or new hire, you’re often filled with questions and need assistance with the little nuances of a new company. I was really lucky to have two engineering mentors that were always willing to talk over the phone, video call, or even answer a quick IM or email that I would send. Along with the ease of contacting people, it was also easy to hop onto virtual meetings, which allowed me to quickly get a feel for the type of work WED does.

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